Merge summarized data about facility pairs

Source: R/summarize_pairs.R

Merge summarized data about facility pairs including patient flow, isolate pairs, and gene flow (Fsp).

merge_inter_summaries(
  patient_flow = NULL,
  isolate_pair_summary = NULL,
  fsp_long = NULL
)

Arguments

patient_flow

output of get_patient_flow function
isolate_pair_summary

output of summarize_pairs function
fsp_long

long-form output of get_genetic_flow function

Value

merged dataframe

Examples

if (FALSE) {
locs <- metadata %>% dplyr::select(isolate_id, facility) %>% tibble::deframe()
pair_types <- get_pair_types(dists, locs)
isolate_pair_summary <- summarize_pairs(pair_types)
patient_flow <- get_patient_flow(pt_trans_df = pt_trans_df)
fsp_long <- make_long_form(fsp)
merge_inter_summaries(patient_flow, isolate_pair_summary, fsp_long)
}